Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.
String matching algorithms for searching a single or multiple strings in large texts
String matching algorithm benchmark
Official sample code for the very fast Franek-Jennings-Smyth (FJS) full text string search algorithm
An efficient Java substring search library
A general, multi-threaded fuzzy searching language, called fuzzysplit, that is built on top of a fast and flexible Java fuzzy search library. Can be applied to demultiplex and trim DNA.
A CLI tool that indexes a given folder and allows efficient searching for string occurrences
HeadlineTextProcessor
My solutions for the challenges exercises from codingbat.com. Purpose: extra practice and solidify common code patterns
Pesquisa de palavras chaves, apartir de arquivos pdf. Informando quantiadades de repetições da pesquisa.
Performance comparison between various String and Pattern operations in Java
A Text File Indexer that filters the text files in a given folder directory and indexes them enabling the user to show the already indexed files and retrieve the files containing a specific word (i.e. the user can search for a specific word effeicently fast).
Effective string searching algorithm (Aho-Corasick).
Multi-search Java library
String program in java
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